T-COFFEE, Version_11.00.8cbe486 (2014-08-12 22:05:29 - Revision 8cbe486 - Build 477)
Cedric Notredame
CPU TIME:0 sec.
SCORE=1000
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BAD AVG GOOD
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Lolium_multiflo : 100
Zea_mays : 100
Triticum_aestiv : 100
Lolium_rigidum : 100
Glycine_max : 100
Arabidopsis_tha : 100
Euphorbia_heter : 100
Abutilon_theoph : 100
Conyza_canadens : 100
Digitaria_sangu : 100
Xanthium_struma : 100
Ambrosia_trifid : 100
Kochia_scoparia : 100
Amaranthus_viri : 100
Amaranthus_palm : 100
Amaranthus_grae : 100
Amaranthus_thun : 100
Amaranthus_tube : 100
Amaranthus_hybr : 100
Amaranthus_rudi : 100
cons : 100
Lolium_multiflo ---------------------------------------------------------------
Zea_mays ---------------------------MPPTPTAAAAGAAVAAASAAEQAAFRLVGHRNFVRF
Triticum_aestiv -------------------------------MPPTPTTPAATGAGAAAAVTPEHARPRRMVRF
Lolium_rigidum ---------------------------------------------------------------
Glycine_max -----------------------------------MCNEIQAQAQAQAQPGFKLVGFKNFVRT
Arabidopsis_tha MCLSLASTAQRNTQFRSRVLVLAELVKSMGHQNAAVSENQNHDDGAASSPGFKLVGFSKFVRK
Euphorbia_heter ---------------------------------------------------------------
Abutilon_theoph ---------------------------------------------------------------
Conyza_canadens ---------------------------------------------------YKLVGFKNFIRQ
Digitaria_sangu ---------------------------------------------------------------
Xanthium_struma ---------------------------------------------------------------
Ambrosia_trifid ---------------------------------------------------------------
Kochia_scoparia ---------------------------------------------TTASTEFKLVGYSNFVRV
Amaranthus_viri --------------------------------------MGTLKPETQPDSEFKLVGYSNFVRV
Amaranthus_palm --------------------------------------MGTLKPETQPDSEFKLVGYSNFVRV
Amaranthus_grae --------------------------------------MGTLKPETQPDSEFKLVGYSNFIRV
Amaranthus_thun ---------------------------------------------------------------
Amaranthus_tube --------------------------------------MGTLIPENQPDSEFKLVGYSNFVRV
Amaranthus_hybr ---------------------------------------------------------------
Amaranthus_rudi ---------------------------------------------------------------
cons
Lolium_multiflo ---------------------------------------------------------------
Zea_mays NPRSDRFHTLAFHHVELWCADAASAAGRFSFGLGAPLAARSDLSTGNSAHASLLLRSGSLSFL
Triticum_aestiv NPRSDRFHTLSFHHVEFWCADAASAAGRFAFALGAPLAARSDLSTGNSVHASQLLRSGNLAFL
Lolium_rigidum ---------------------------------------------------------------
Glycine_max NPKSDRFQVNRFHHIEFWCTDATNASRRFSWGLGMPIVAKSDLSTGNQIHASYLLRSGDLSFL
Arabidopsis_tha NPKSDKFKVKRFHHIEFWCGDATNVARRFSWGLGMRFSAKSDLSTGNMVHASYLLTSGDLRFL
Euphorbia_heter ---------------------------------------------------------------
Abutilon_theoph -------------------TDATNAACRFSWGLGMQFVAKSDLSTGNLSHASYLLRSDHLSLL
Conyza_canadens NPKSDKFTVKKFHHVEFWCSDATNTARRFSWGLGMPLLYKSDLSTGNNTHASYLINSGQLNFL
Digitaria_sangu ---------------------------------------------------------------
Xanthium_struma ---------------------------------------------------------------
Ambrosia_trifid ---------------------------------------------------------------
Kochia_scoparia NPMSDLFSVKKFHHIEFWCGDATNVSRRFSWGLGMPAVAKSDLSTGNSVHASYLLRSGDLSFL
Amaranthus_viri NPKSDRFTVKRFHHIEFWCGDATNVSRRFSWGLGMPTVAKSDLSTGNSVHASFLLRSGDLSFL
Amaranthus_palm NPKSDRFAVKRFHHIEFWCGDATNVSRRFSWGLGMPTVAKSDLSTGNSVHASFLLRSGDLSFL
Amaranthus_grae NPKSDRFTVKRFHHIEFWCGDATNVSRRFSWGLGMPTVAKSDLSTGNSVHASFLLRSGDLSFL
Amaranthus_thun ---------------------------------------------------------------
Amaranthus_tube NPKSDRFNVKRFHHIEFWCGDATNVSRRFSWGLGMPTVAKSDLSTGNSVHASFLLSSGDLSFL
Amaranthus_hybr ---------------------------------------------------------------
Amaranthus_rudi ---------------------------------------------------------------
cons
Lolium_multiflo ---------------------------------------------------------------
Zea_mays FTAPYAHGAD------A-ATAALPSFSAAAARRFAADHGLAVRAVALRVADAEEAFRTSVAAG
Triticum_aestiv FTAPYANGCD------A-ATASLPSFSADAARRFSADHGLAVRSIALRVADAAEAFRASVDGG
Lolium_rigidum ---------------------------------------------------------------
Glycine_max FSAPYSPSLS-AGSSAA-SSASIPSFDAATCLAFAAKHGFGVRAIALEVADAEAAFSASVAKG
Arabidopsis_tha FTAPYSPSLS-AGEIKPTTTASIPSFDHGSCRSFFSSHGLGVRAVAIEVEDAESAFSISVANG
Euphorbia_heter ---------------------------------------------------------------
Abutilon_theoph FTAPYSPSIALSQNISPHSTASIPSFDHTLCRSFSSSHGLVVRAIALEVEDSETAFATSISNG
Conyza_canadens FTAPYSTTIS-----TTGSTSSIPTFSHTACRNFTATHGLAVRSIAVEVEDAEIAYSVSIAHG
Digitaria_sangu ---------------------------------------------------------------
Xanthium_struma ---------------------------------------------------------------
Ambrosia_trifid ---------------------------------------------------------------
Kochia_scoparia FTSPYSPSLS-----SP-SSAAIPTFDFSLFSSFITSHGIGVRAVALEVDDAEVAFNTSVSHG
Amaranthus_viri FTSPYSPTMS-----VP-SSAAIPSFDFNHFTKFLTSHGLGVRAVAVEVEDAEAAFNISVSNG
Amaranthus_palm FTSPYSPTMS-----IP-SSAAIPSFDFNHFTKFLTSHGLGVRAVAVEVEDAEAAFNISVSHG
Amaranthus_grae FTSPYSPTMS-----IP-SSAAIPSFDFNHFTKFVTSHGLGVRAVAVEVEDAEAAFNISVSHG
Amaranthus_thun ---------------------------------------------------------------
Amaranthus_tube FTSPYSPTMS-----IP-SSAAIPSFDFNHFTKFLTSHGLGVRAVAVEVEDAEAAFNISVSNG
Amaranthus_hybr ---------------------------------------------------------------
Amaranthus_rudi ----------------------------------LTSHGLGVRAVAVEVEDAEAAFNISVSNG
cons
Lolium_multiflo ---------LGHG-FGFAEVELAGDSVLRFVSYPDGT--------DVSFLPGFQDVASAGGAP
Zea_mays ARPAFGPVDLGRG-FRLAEVELYGDVVLRYVSYPDGA-------AGEPFLPGFEGVASPGA--
Triticum_aestiv ARPAFSPVDLGRG-FGFAEVELYGDVVLRFVSHPDDT--------DVPFLPGFEGVSNPDA--
Lolium_rigidum ---------------------------------------------------------------
Glycine_max AEPASPPVLVDDR-TGFAEVRLYGDVVLRYVSYKDAAPQAPHADPSRWFLPGFEAAASSSSFP
Arabidopsis_tha AIPSSPPIVLNEA-VTIAEVKLYGDVVLRYVSYKAED------TEKSEFLPGFERVEDASSFP
Euphorbia_heter ------------------------------------------------FLPKFEPVDEASSFP
Abutilon_theoph ALPSSPPILLDGA--TISEVKLYGDVVLRYVSYSKNT-------NPHHFLPGFEKVEDNLSYP
Conyza_canadens AKPSSAPVTLGNNDVVLAEVKLYGDVVLRYVSFKNTN-----YDVTTNFLPGFEPVDATSSFH
Digitaria_sangu -----------------------------------------------MFLPGFEAVEKTSSFE
Xanthium_struma ---------------------------------------------------------------
Ambrosia_trifid ---------------------------------------------------------------
Kochia_scoparia AIPGSPPIKLGNG-VVLSEVSLYGDVVLRYVSYGGET-EKADTNSNSWFLPGFEEMPEESSFR
Amaranthus_viri AIPCVSPIQLENG-VVLSEVHLYGDVVLRYVSYGNEC-------GDVFFLPGFEEMPEESSFR
Amaranthus_palm AIPCVSPIQLENG-VVLSEVHLYGDVVLRYVSYGNEC-------GDVFFLPGFEEMPEESSFR
Amaranthus_grae AIPCVSPIHLENG-VVLSEVHLYGDVVLRYVSYGNEC-------GDVFFLPGFEQMPEESSFR
Amaranthus_thun ---------------------------------------------------------------
Amaranthus_tube AIPCVSPIHLENG-VVLSEVHLYGDVVLRYVSYGNEC-------GDVFFLPGFEEMPEESSFR
Amaranthus_hybr -------------------------------------------------LPGFEEMPEESSFR
Amaranthus_rudi AIPCVSPIQLENG-VVLSEVHLYGDVVLRYVSYGNER-------GDVFFLPGFEEMPEESSFR
cons
Lolium_multiflo --DFGLTRFDHVDVNIPELAPVAANVAGFTGFHKFWEFTADDVCPEESGVNGVVIANNSENVL
Zea_mays -ADYGLSRFDHIVGNVPELAPAAAYFAGFTGFHEFAEFTTEDVGTAESGLNSMVLANNSENVL
Triticum_aestiv -VDYGLTRFDHVVGNVPELAPAAAYVAGFAGFHEFAEFTTEDVGTAESGLNSMVLANNSEGVL
Lolium_rigidum ---------------------------------------------------------------
Glycine_max ELDYGIRRLDHAVGNVPELAPAVRYLKGFSGFHEFAEFTAEDVGTSESGLNSVVLANNSETVL
Arabidopsis_tha -LDYGIRRLDHAVGNVPELGPALTYVAGFTGFHQFAEFTADDVGTAESGLNSAVLASNDEMVL
Euphorbia_heter -LDYGIRRLDHAVGNVPDLAPAVSYVKKFTGFHEFAEFTAEDVGTSESGLNSVVLANNEETVL
Abutilon_theoph -LDYGIRRLDHAVCCVPELGPAISYVKSFTGFHDLAEFTAEDVGTSESGLNSVILANNNEMVL
Conyza_canadens ELNYGIHKLDHAVGNVPELAPAVDYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLACNSETVL
Digitaria_sangu ELDYGIRRLDHAVGNVPELAPAVEYIKSFTGFHEFAEFTAEDVGTSESGLNSVVLACNSEMVL
Xanthium_struma -----IRRVDHAVGNVPELAPAVEYIKSFTGFHEFAEFTAEDVGTSESGLNSVVLACNSEMVL
Ambrosia_trifid ---------------------------------------------------------------
Kochia_scoparia GLDFGLRRLDHAVGNVPELGKAIEYVKKFTGFHEFAEFTADDVGTSESGLNSAVLANNSETVL
Amaranthus_viri GLDFGLRRLDHAVGNVPELAPAIAYLKKFTGFHEFAEFTAEDVGTSESGLNSAVLANNDEMVL
Amaranthus_palm GLDFGIRRLDHAVGNVPELAPAIAYLKKFTGFHEFAEFTAEDVGTSESGLNSAVLANNDEMVL
Amaranthus_grae GLDFGLRRLDHAVGNVPELAPAIAYLKKFTGFHEFAEFTAEDVGTSESGLNSAVLANNDEMVL
Amaranthus_thun ----------------PELAPAIAYLKKFTGFHEFAEFTAEDVGTSESGLNSAVLANNDEMVL
Amaranthus_tube GLDFGLRRLDHAVGNVPELAPAIAYLKKFTGFHEFAEFTAEDVGTSESGLNSAVLANNDEMVL
Amaranthus_hybr GLDFGLRRLDHAVGNVPELAPAIAYLKKFTGFHEFAEFTAEDVGTSESGLNSAVLANNDEMVL
Amaranthus_rudi GLDFGLRRLDHAVGNVPELAPAIAYLKKFTGFHEFAEFTAEDVGTSESGLNSAVLANNDEMVL
cons
Lolium_multiflo LSILEPVFGTKLRSHVETFLDHHGGPGIQHLAMTSHDILGALRKIRARSSMGGFELLPPPPAS
Zea_mays LPLNEPVHGTKRRSQIQTFLDHHGGPGVQHMALASDDVLRTLREMQARSAMGGFEFMAPPTSD
Triticum_aestiv LPLNEPVHGTKRRSQIQTFLEHHGGSGVQHIAVASSDVLRTLREMRARSAMGGFDFLPPRCRK
Lolium_rigidum -----PVHGTKRRSQIQTYLDYHGGPGVQHIALASSDVLRTLREMRARTPMGGFEFMAPPQAK
Glycine_max LPLNEPVYGTKRKSQIETYLEHNEGAGVQHLALVTHDIFTTLREMRKRSFLGGFEFMPSPPPT
Arabidopsis_tha LPINEPVHGTKRKSQIQTYLEHNEGAGLQHLALMSEDIFRTLREMRKRSSIGGFDFMPSPPPT
Euphorbia_heter LPMNEPVFGTKRKSQIQTYLEHNEGAGVQHLALVSADIFNTLREMRRRSA-------------
Abutilon_theoph MPIAEPVYGTKRKSQVQTYLEHNEGAGVQHLALLSEDIFRTLREMRKRSFVGGFEFMPSPPPT
Conyza_canadens IPMNEPVYGTKRKSQIQTYLEHNEGAGVQHLALASEDIFRTLREMRKRSSVGGFEFMPSPPPT
Digitaria_sangu IPMNEPVYGTKRKSQIQTYLEHNEGAGVQHLALASEDIFRTLREMRKRSGVGGFEFMPSPPPT
Xanthium_struma IPMNEPVYGTKRKSQIQTYLEHNEGAGVQHLALASEDIFRTLREMRKRSGVGGFEFMPSPPPT
Ambrosia_trifid -----PVYGTKRKSQIQTYLEHNEGAGVQHLALASEDIFRTLREMRKRSGVGGFEFMPSPPPT
Kochia_scoparia IPMNEPVYGTKRKSQIQTYLEHNEGAGVQHLALMSEDIFWTLREMRKRSGLGGFEFMPAPPPT
Amaranthus_viri FPMNEPVYGTKRKSQIQTYLEHNEGAGVQHLALMSEDIFWTLREMRKRSGLGGFEFMPSPPPT
Amaranthus_palm FPMNEPVYGTKRKSQIQTYLEHNEGAGVQHLALMSEDIFWTLREMRKRSGLGGFEFMPSPPPT
Amaranthus_grae FPMNEPVYGTKRKSQIQTYLEHNEGAGVQHLALMSEDIFWTLREMRKRSGLGGFEFMPSPPPT
Amaranthus_thun FPMNEPVYGTKRKSQIQTYLEHNEGAGVQHLALMSEDIFWTLREMRKRSGLGGFEFMPSPPPT
Amaranthus_tube FPMNEPVYGTKRKSQIQTYLEHNEGAGVQHLALMSEDIFWTLREMRKRSGLGGFEFMPSPPPT
Amaranthus_hybr FPMNEPVYGTKRKSQIQTYLEHNEGAGVQHLALMSEDIFWTLREMRKRSGLGGFEFMPSPPPT
Amaranthus_rudi FPMNEPVYGTKRKSQIQTYLEHNEGAGVQHLALMSEDIFWTLREMRKRSGLGGFEFMPSPPPT
cons **.*** :*:::*:*::: *.*:**:*: : *:: :**::: *:
Lolium_multiflo YYDGVRQRAGDVLSEEQIKECQELGVRVDRGYEDGVVLQVFTKPAGD-PTLLLEFIQRIGCMV
Zea_mays YYDGVRRRAGDVLTEAQIKECQELGVLVDRD-DQGVLLQIFPKPVGDRPTLFLEIIQRIGCME
Triticum_aestiv YYEGVRRIAGDVLSEAQIKECQELGVLVDRD-DQGVLLQIFTKPVGDRPTLFLEMIQRIGCME
Lolium_rigidum YYDGVRRIAGDVLSEEQIKECQELGVLVDRD-DQGVLLQIFTKPVGDRPTFFLEMIQRIGCME
Glycine_max YYANLHNRAADVLTVDQIKQCEELGILVDRD-DQGTLLQIFTKPVGDRPTIFIEIIQRIGCMV
Arabidopsis_tha YYQNLKKRVGDVLSDDQIKECEELGILVDRD-DQGTLLQIFTKPL--RPTIFIEIIQRVGCMM
Euphorbia_heter ---------------------------------------------------------------
Abutilon_theoph YYEKLKQRVGDILSDEQIKECEELGIMVDRD-DQGTLLQIFTKPIGDRPTILLEIIQRIGCMV
Conyza_canadens YYKNLKNRVGDVLSDEQIKECEELGILVDRD-DQGTLLQIFTKPVGDRPTIFIEIIQRVGCML
Digitaria_sangu YYRNLKNRVGDVLSDEQIKECEELGILVDRD-DQGTLLQIFTKPVGDRPTIFIEIIQRVGCMV
Xanthium_struma YYRNLKNRVGDVLSDEQIKECEELGILVDRD-DQGTLLQIFTKPVGDRPTIFIEIIQRVGCMV
Ambrosia_trifid YYRNLKNRAGDVLSDEQIKECEELGILVDKD-DQGTLLQIFTKPVGDRPTIFIEIIQRVGCMM
Kochia_scoparia YYRNLRNRVGDVLSEEQMKECEELGILVDKD-DQGTLLQIFTKHIGD-PTMFIEIIQRIGCMM
Amaranthus_viri YYRNLRNRAADVLSEEQMKECEELGILVDRD-DQGTLLQIFTKPIGDRPTIFIEIIQRLGCMV
Amaranthus_palm YYRNLRSRAADVLSEEQMKECEELGILVDKD-DQGTLLQIFTKPIGDRPTIFIEIIQRIGCMM
Amaranthus_grae YYRNLRNRAADVLSEEQMKECEELGILVDKD-DQGTLLQIFTKPIGDRPTIFIEIIQRIGCMM
Amaranthus_thun YYRNLRNRAADVLSEEQMKECEELGILVDKD-DQGTLLQIFTKPIGDRPTIFIEIIQRIGCMM
Amaranthus_tube YYRNLRNRAADVLSEEQMKECEELGILVDKD-DQGTLLQIFTKPIGDRPTIFIEIIQRIGCMM
Amaranthus_hybr YYRNLRNRAADVLSEEQMKECEELGILVDKD-DQGTLLQIFTK--------------------
Amaranthus_rudi YYRNLRNRAADVLSEEQMKECEELGILVDKD-DQGTLLQIFTKPIGDRPTIFIEIIQRIGCMM
cons
Lolium_multiflo KDENQQEYQRGGCGGFAKGNVSELIKDIED-------------------
Zea_mays RDEKGQEYQKGGCGGFGKGNFSQLFKSIEDYEKSLEAMQAAAAATAQGS
Triticum_aestiv KDERGEEYQKGGCGGFGKGNFSELFKSIEDYEKSLEAKQSAAVQGS---
Lolium_rigidum KDEVGQEYQKGGCGGFGKGNFSELXXS----------------------
Glycine_max EDEEGKVYQKGACGGFGKGNFSELFKSIEEYEKTLEAKRTA--------
Arabidopsis_tha KDEEGKAYQSGGCGGFGKGNFSELFKSIEEYEKTLEAKQL---------
Euphorbia_heter -------------------------------------------------
Abutilon_theoph KDEEGKQYQKGGCG-----------------------------------
Conyza_canadens KDDEGKVQQKPGCGGFGKGNFSELFKSIEEYEKTLEARNTTEPTATA--
Digitaria_sangu KDNEGKEQQKAGCGGFGKGNFSELFKSIEEYEKTLEARATTEATAAA--
Xanthium_struma KDNEGKEQQKAGCGGFGKGNFSELFKSIEEYEKTLEARATTEATAAA--
Ambrosia_trifid KDEEGKVQQKAGCGGFGKGNFSELFKSIEEYEKTLEART----------
Kochia_scoparia KDEEGKVYQKGGCGGFGKGNFSELFKSIEEYEKTLE-------------
Amaranthus_viri -------------------------------------------------
Amaranthus_palm KDEDGKMYQKGGCGGFGKGNFSELFKSIEEYEKTLERKQVPDTAAA---
Amaranthus_grae KDEDGK-------------------------------------------
Amaranthus_thun KDEDGKMYQKGGCGGFGKGNFSELFKSIEEYEKTLERKQVPDTAAA---
Amaranthus_tube KDEDGKMYQKGGCGGFGKGNFSELFKSIEEYEKTLERKQVPDTAAA---
Amaranthus_hybr -------------------------------------------------
Amaranthus_rudi KDEDGKMYQKGGCGGFGKGNFSELFKSIEEYEKTLERKQVPDTAAA---
cons