T-COFFEE, Version_11.00.8cbe486 (2014-08-12 22:05:29 - Revision 8cbe486 - Build 477)
Cedric Notredame 
CPU TIME:0 sec.
SCORE=1000
*
 BAD AVG GOOD
*
Lolium_multiflo   : 100
Zea_mays          : 100
Triticum_aestiv   : 100
Lolium_rigidum    : 100
Glycine_max       : 100
Arabidopsis_tha   : 100
Euphorbia_heter   : 100
Abutilon_theoph   : 100
Conyza_canadens   : 100
Digitaria_sangu   : 100
Xanthium_struma   : 100
Ambrosia_trifid   : 100
Kochia_scoparia   : 100
Amaranthus_viri   : 100
Amaranthus_palm   : 100
Amaranthus_grae   : 100
Amaranthus_thun   : 100
Amaranthus_tube   : 100
Amaranthus_hybr   : 100
Amaranthus_rudi   : 100
cons              : 100

Lolium_multiflo   ---------------------------------------------------------------
Zea_mays          ---------------------------MPPTPTAAAAGAAVAAASAAEQAAFRLVGHRNFVRF
Triticum_aestiv   -------------------------------MPPTPTTPAATGAGAAAAVTPEHARPRRMVRF
Lolium_rigidum    ---------------------------------------------------------------
Glycine_max       -----------------------------------MCNEIQAQAQAQAQPGFKLVGFKNFVRT
Arabidopsis_tha   MCLSLASTAQRNTQFRSRVLVLAELVKSMGHQNAAVSENQNHDDGAASSPGFKLVGFSKFVRK
Euphorbia_heter   ---------------------------------------------------------------
Abutilon_theoph   ---------------------------------------------------------------
Conyza_canadens   ---------------------------------------------------YKLVGFKNFIRQ
Digitaria_sangu   ---------------------------------------------------------------
Xanthium_struma   ---------------------------------------------------------------
Ambrosia_trifid   ---------------------------------------------------------------
Kochia_scoparia   ---------------------------------------------TTASTEFKLVGYSNFVRV
Amaranthus_viri   --------------------------------------MGTLKPETQPDSEFKLVGYSNFVRV
Amaranthus_palm   --------------------------------------MGTLKPETQPDSEFKLVGYSNFVRV
Amaranthus_grae   --------------------------------------MGTLKPETQPDSEFKLVGYSNFIRV
Amaranthus_thun   ---------------------------------------------------------------
Amaranthus_tube   --------------------------------------MGTLIPENQPDSEFKLVGYSNFVRV
Amaranthus_hybr   ---------------------------------------------------------------
Amaranthus_rudi   ---------------------------------------------------------------

cons                                                                             


Lolium_multiflo   ---------------------------------------------------------------
Zea_mays          NPRSDRFHTLAFHHVELWCADAASAAGRFSFGLGAPLAARSDLSTGNSAHASLLLRSGSLSFL
Triticum_aestiv   NPRSDRFHTLSFHHVEFWCADAASAAGRFAFALGAPLAARSDLSTGNSVHASQLLRSGNLAFL
Lolium_rigidum    ---------------------------------------------------------------
Glycine_max       NPKSDRFQVNRFHHIEFWCTDATNASRRFSWGLGMPIVAKSDLSTGNQIHASYLLRSGDLSFL
Arabidopsis_tha   NPKSDKFKVKRFHHIEFWCGDATNVARRFSWGLGMRFSAKSDLSTGNMVHASYLLTSGDLRFL
Euphorbia_heter   ---------------------------------------------------------------
Abutilon_theoph   -------------------TDATNAACRFSWGLGMQFVAKSDLSTGNLSHASYLLRSDHLSLL
Conyza_canadens   NPKSDKFTVKKFHHVEFWCSDATNTARRFSWGLGMPLLYKSDLSTGNNTHASYLINSGQLNFL
Digitaria_sangu   ---------------------------------------------------------------
Xanthium_struma   ---------------------------------------------------------------
Ambrosia_trifid   ---------------------------------------------------------------
Kochia_scoparia   NPMSDLFSVKKFHHIEFWCGDATNVSRRFSWGLGMPAVAKSDLSTGNSVHASYLLRSGDLSFL
Amaranthus_viri   NPKSDRFTVKRFHHIEFWCGDATNVSRRFSWGLGMPTVAKSDLSTGNSVHASFLLRSGDLSFL
Amaranthus_palm   NPKSDRFAVKRFHHIEFWCGDATNVSRRFSWGLGMPTVAKSDLSTGNSVHASFLLRSGDLSFL
Amaranthus_grae   NPKSDRFTVKRFHHIEFWCGDATNVSRRFSWGLGMPTVAKSDLSTGNSVHASFLLRSGDLSFL
Amaranthus_thun   ---------------------------------------------------------------
Amaranthus_tube   NPKSDRFNVKRFHHIEFWCGDATNVSRRFSWGLGMPTVAKSDLSTGNSVHASFLLSSGDLSFL
Amaranthus_hybr   ---------------------------------------------------------------
Amaranthus_rudi   ---------------------------------------------------------------

cons                                                                             


Lolium_multiflo   ---------------------------------------------------------------
Zea_mays          FTAPYAHGAD------A-ATAALPSFSAAAARRFAADHGLAVRAVALRVADAEEAFRTSVAAG
Triticum_aestiv   FTAPYANGCD------A-ATASLPSFSADAARRFSADHGLAVRSIALRVADAAEAFRASVDGG
Lolium_rigidum    ---------------------------------------------------------------
Glycine_max       FSAPYSPSLS-AGSSAA-SSASIPSFDAATCLAFAAKHGFGVRAIALEVADAEAAFSASVAKG
Arabidopsis_tha   FTAPYSPSLS-AGEIKPTTTASIPSFDHGSCRSFFSSHGLGVRAVAIEVEDAESAFSISVANG
Euphorbia_heter   ---------------------------------------------------------------
Abutilon_theoph   FTAPYSPSIALSQNISPHSTASIPSFDHTLCRSFSSSHGLVVRAIALEVEDSETAFATSISNG
Conyza_canadens   FTAPYSTTIS-----TTGSTSSIPTFSHTACRNFTATHGLAVRSIAVEVEDAEIAYSVSIAHG
Digitaria_sangu   ---------------------------------------------------------------
Xanthium_struma   ---------------------------------------------------------------
Ambrosia_trifid   ---------------------------------------------------------------
Kochia_scoparia   FTSPYSPSLS-----SP-SSAAIPTFDFSLFSSFITSHGIGVRAVALEVDDAEVAFNTSVSHG
Amaranthus_viri   FTSPYSPTMS-----VP-SSAAIPSFDFNHFTKFLTSHGLGVRAVAVEVEDAEAAFNISVSNG
Amaranthus_palm   FTSPYSPTMS-----IP-SSAAIPSFDFNHFTKFLTSHGLGVRAVAVEVEDAEAAFNISVSHG
Amaranthus_grae   FTSPYSPTMS-----IP-SSAAIPSFDFNHFTKFVTSHGLGVRAVAVEVEDAEAAFNISVSHG
Amaranthus_thun   ---------------------------------------------------------------
Amaranthus_tube   FTSPYSPTMS-----IP-SSAAIPSFDFNHFTKFLTSHGLGVRAVAVEVEDAEAAFNISVSNG
Amaranthus_hybr   ---------------------------------------------------------------
Amaranthus_rudi   ----------------------------------LTSHGLGVRAVAVEVEDAEAAFNISVSNG

cons                                                                             


Lolium_multiflo   ---------LGHG-FGFAEVELAGDSVLRFVSYPDGT--------DVSFLPGFQDVASAGGAP
Zea_mays          ARPAFGPVDLGRG-FRLAEVELYGDVVLRYVSYPDGA-------AGEPFLPGFEGVASPGA--
Triticum_aestiv   ARPAFSPVDLGRG-FGFAEVELYGDVVLRFVSHPDDT--------DVPFLPGFEGVSNPDA--
Lolium_rigidum    ---------------------------------------------------------------
Glycine_max       AEPASPPVLVDDR-TGFAEVRLYGDVVLRYVSYKDAAPQAPHADPSRWFLPGFEAAASSSSFP
Arabidopsis_tha   AIPSSPPIVLNEA-VTIAEVKLYGDVVLRYVSYKAED------TEKSEFLPGFERVEDASSFP
Euphorbia_heter   ------------------------------------------------FLPKFEPVDEASSFP
Abutilon_theoph   ALPSSPPILLDGA--TISEVKLYGDVVLRYVSYSKNT-------NPHHFLPGFEKVEDNLSYP
Conyza_canadens   AKPSSAPVTLGNNDVVLAEVKLYGDVVLRYVSFKNTN-----YDVTTNFLPGFEPVDATSSFH
Digitaria_sangu   -----------------------------------------------MFLPGFEAVEKTSSFE
Xanthium_struma   ---------------------------------------------------------------
Ambrosia_trifid   ---------------------------------------------------------------
Kochia_scoparia   AIPGSPPIKLGNG-VVLSEVSLYGDVVLRYVSYGGET-EKADTNSNSWFLPGFEEMPEESSFR
Amaranthus_viri   AIPCVSPIQLENG-VVLSEVHLYGDVVLRYVSYGNEC-------GDVFFLPGFEEMPEESSFR
Amaranthus_palm   AIPCVSPIQLENG-VVLSEVHLYGDVVLRYVSYGNEC-------GDVFFLPGFEEMPEESSFR
Amaranthus_grae   AIPCVSPIHLENG-VVLSEVHLYGDVVLRYVSYGNEC-------GDVFFLPGFEQMPEESSFR
Amaranthus_thun   ---------------------------------------------------------------
Amaranthus_tube   AIPCVSPIHLENG-VVLSEVHLYGDVVLRYVSYGNEC-------GDVFFLPGFEEMPEESSFR
Amaranthus_hybr   -------------------------------------------------LPGFEEMPEESSFR
Amaranthus_rudi   AIPCVSPIQLENG-VVLSEVHLYGDVVLRYVSYGNER-------GDVFFLPGFEEMPEESSFR

cons                                                                             


Lolium_multiflo   --DFGLTRFDHVDVNIPELAPVAANVAGFTGFHKFWEFTADDVCPEESGVNGVVIANNSENVL
Zea_mays          -ADYGLSRFDHIVGNVPELAPAAAYFAGFTGFHEFAEFTTEDVGTAESGLNSMVLANNSENVL
Triticum_aestiv   -VDYGLTRFDHVVGNVPELAPAAAYVAGFAGFHEFAEFTTEDVGTAESGLNSMVLANNSEGVL
Lolium_rigidum    ---------------------------------------------------------------
Glycine_max       ELDYGIRRLDHAVGNVPELAPAVRYLKGFSGFHEFAEFTAEDVGTSESGLNSVVLANNSETVL
Arabidopsis_tha   -LDYGIRRLDHAVGNVPELGPALTYVAGFTGFHQFAEFTADDVGTAESGLNSAVLASNDEMVL
Euphorbia_heter   -LDYGIRRLDHAVGNVPDLAPAVSYVKKFTGFHEFAEFTAEDVGTSESGLNSVVLANNEETVL
Abutilon_theoph   -LDYGIRRLDHAVCCVPELGPAISYVKSFTGFHDLAEFTAEDVGTSESGLNSVILANNNEMVL
Conyza_canadens   ELNYGIHKLDHAVGNVPELAPAVDYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLACNSETVL
Digitaria_sangu   ELDYGIRRLDHAVGNVPELAPAVEYIKSFTGFHEFAEFTAEDVGTSESGLNSVVLACNSEMVL
Xanthium_struma   -----IRRVDHAVGNVPELAPAVEYIKSFTGFHEFAEFTAEDVGTSESGLNSVVLACNSEMVL
Ambrosia_trifid   ---------------------------------------------------------------
Kochia_scoparia   GLDFGLRRLDHAVGNVPELGKAIEYVKKFTGFHEFAEFTADDVGTSESGLNSAVLANNSETVL
Amaranthus_viri   GLDFGLRRLDHAVGNVPELAPAIAYLKKFTGFHEFAEFTAEDVGTSESGLNSAVLANNDEMVL
Amaranthus_palm   GLDFGIRRLDHAVGNVPELAPAIAYLKKFTGFHEFAEFTAEDVGTSESGLNSAVLANNDEMVL
Amaranthus_grae   GLDFGLRRLDHAVGNVPELAPAIAYLKKFTGFHEFAEFTAEDVGTSESGLNSAVLANNDEMVL
Amaranthus_thun   ----------------PELAPAIAYLKKFTGFHEFAEFTAEDVGTSESGLNSAVLANNDEMVL
Amaranthus_tube   GLDFGLRRLDHAVGNVPELAPAIAYLKKFTGFHEFAEFTAEDVGTSESGLNSAVLANNDEMVL
Amaranthus_hybr   GLDFGLRRLDHAVGNVPELAPAIAYLKKFTGFHEFAEFTAEDVGTSESGLNSAVLANNDEMVL
Amaranthus_rudi   GLDFGLRRLDHAVGNVPELAPAIAYLKKFTGFHEFAEFTAEDVGTSESGLNSAVLANNDEMVL

cons                                                                             


Lolium_multiflo   LSILEPVFGTKLRSHVETFLDHHGGPGIQHLAMTSHDILGALRKIRARSSMGGFELLPPPPAS
Zea_mays          LPLNEPVHGTKRRSQIQTFLDHHGGPGVQHMALASDDVLRTLREMQARSAMGGFEFMAPPTSD
Triticum_aestiv   LPLNEPVHGTKRRSQIQTFLEHHGGSGVQHIAVASSDVLRTLREMRARSAMGGFDFLPPRCRK
Lolium_rigidum    -----PVHGTKRRSQIQTYLDYHGGPGVQHIALASSDVLRTLREMRARTPMGGFEFMAPPQAK
Glycine_max       LPLNEPVYGTKRKSQIETYLEHNEGAGVQHLALVTHDIFTTLREMRKRSFLGGFEFMPSPPPT
Arabidopsis_tha   LPINEPVHGTKRKSQIQTYLEHNEGAGLQHLALMSEDIFRTLREMRKRSSIGGFDFMPSPPPT
Euphorbia_heter   LPMNEPVFGTKRKSQIQTYLEHNEGAGVQHLALVSADIFNTLREMRRRSA-------------
Abutilon_theoph   MPIAEPVYGTKRKSQVQTYLEHNEGAGVQHLALLSEDIFRTLREMRKRSFVGGFEFMPSPPPT
Conyza_canadens   IPMNEPVYGTKRKSQIQTYLEHNEGAGVQHLALASEDIFRTLREMRKRSSVGGFEFMPSPPPT
Digitaria_sangu   IPMNEPVYGTKRKSQIQTYLEHNEGAGVQHLALASEDIFRTLREMRKRSGVGGFEFMPSPPPT
Xanthium_struma   IPMNEPVYGTKRKSQIQTYLEHNEGAGVQHLALASEDIFRTLREMRKRSGVGGFEFMPSPPPT
Ambrosia_trifid   -----PVYGTKRKSQIQTYLEHNEGAGVQHLALASEDIFRTLREMRKRSGVGGFEFMPSPPPT
Kochia_scoparia   IPMNEPVYGTKRKSQIQTYLEHNEGAGVQHLALMSEDIFWTLREMRKRSGLGGFEFMPAPPPT
Amaranthus_viri   FPMNEPVYGTKRKSQIQTYLEHNEGAGVQHLALMSEDIFWTLREMRKRSGLGGFEFMPSPPPT
Amaranthus_palm   FPMNEPVYGTKRKSQIQTYLEHNEGAGVQHLALMSEDIFWTLREMRKRSGLGGFEFMPSPPPT
Amaranthus_grae   FPMNEPVYGTKRKSQIQTYLEHNEGAGVQHLALMSEDIFWTLREMRKRSGLGGFEFMPSPPPT
Amaranthus_thun   FPMNEPVYGTKRKSQIQTYLEHNEGAGVQHLALMSEDIFWTLREMRKRSGLGGFEFMPSPPPT
Amaranthus_tube   FPMNEPVYGTKRKSQIQTYLEHNEGAGVQHLALMSEDIFWTLREMRKRSGLGGFEFMPSPPPT
Amaranthus_hybr   FPMNEPVYGTKRKSQIQTYLEHNEGAGVQHLALMSEDIFWTLREMRKRSGLGGFEFMPSPPPT
Amaranthus_rudi   FPMNEPVYGTKRKSQIQTYLEHNEGAGVQHLALMSEDIFWTLREMRKRSGLGGFEFMPSPPPT

cons                   **.*** :*:::*:*::: *.*:**:*: : *:: :**::: *:              


Lolium_multiflo   YYDGVRQRAGDVLSEEQIKECQELGVRVDRGYEDGVVLQVFTKPAGD-PTLLLEFIQRIGCMV
Zea_mays          YYDGVRRRAGDVLTEAQIKECQELGVLVDRD-DQGVLLQIFPKPVGDRPTLFLEIIQRIGCME
Triticum_aestiv   YYEGVRRIAGDVLSEAQIKECQELGVLVDRD-DQGVLLQIFTKPVGDRPTLFLEMIQRIGCME
Lolium_rigidum    YYDGVRRIAGDVLSEEQIKECQELGVLVDRD-DQGVLLQIFTKPVGDRPTFFLEMIQRIGCME
Glycine_max       YYANLHNRAADVLTVDQIKQCEELGILVDRD-DQGTLLQIFTKPVGDRPTIFIEIIQRIGCMV
Arabidopsis_tha   YYQNLKKRVGDVLSDDQIKECEELGILVDRD-DQGTLLQIFTKPL--RPTIFIEIIQRVGCMM
Euphorbia_heter   ---------------------------------------------------------------
Abutilon_theoph   YYEKLKQRVGDILSDEQIKECEELGIMVDRD-DQGTLLQIFTKPIGDRPTILLEIIQRIGCMV
Conyza_canadens   YYKNLKNRVGDVLSDEQIKECEELGILVDRD-DQGTLLQIFTKPVGDRPTIFIEIIQRVGCML
Digitaria_sangu   YYRNLKNRVGDVLSDEQIKECEELGILVDRD-DQGTLLQIFTKPVGDRPTIFIEIIQRVGCMV
Xanthium_struma   YYRNLKNRVGDVLSDEQIKECEELGILVDRD-DQGTLLQIFTKPVGDRPTIFIEIIQRVGCMV
Ambrosia_trifid   YYRNLKNRAGDVLSDEQIKECEELGILVDKD-DQGTLLQIFTKPVGDRPTIFIEIIQRVGCMM
Kochia_scoparia   YYRNLRNRVGDVLSEEQMKECEELGILVDKD-DQGTLLQIFTKHIGD-PTMFIEIIQRIGCMM
Amaranthus_viri   YYRNLRNRAADVLSEEQMKECEELGILVDRD-DQGTLLQIFTKPIGDRPTIFIEIIQRLGCMV
Amaranthus_palm   YYRNLRSRAADVLSEEQMKECEELGILVDKD-DQGTLLQIFTKPIGDRPTIFIEIIQRIGCMM
Amaranthus_grae   YYRNLRNRAADVLSEEQMKECEELGILVDKD-DQGTLLQIFTKPIGDRPTIFIEIIQRIGCMM
Amaranthus_thun   YYRNLRNRAADVLSEEQMKECEELGILVDKD-DQGTLLQIFTKPIGDRPTIFIEIIQRIGCMM
Amaranthus_tube   YYRNLRNRAADVLSEEQMKECEELGILVDKD-DQGTLLQIFTKPIGDRPTIFIEIIQRIGCMM
Amaranthus_hybr   YYRNLRNRAADVLSEEQMKECEELGILVDKD-DQGTLLQIFTK--------------------
Amaranthus_rudi   YYRNLRNRAADVLSEEQMKECEELGILVDKD-DQGTLLQIFTKPIGDRPTIFIEIIQRIGCMM

cons                                                                             


Lolium_multiflo   KDENQQEYQRGGCGGFAKGNVSELIKDIED-------------------
Zea_mays          RDEKGQEYQKGGCGGFGKGNFSQLFKSIEDYEKSLEAMQAAAAATAQGS
Triticum_aestiv   KDERGEEYQKGGCGGFGKGNFSELFKSIEDYEKSLEAKQSAAVQGS---
Lolium_rigidum    KDEVGQEYQKGGCGGFGKGNFSELXXS----------------------
Glycine_max       EDEEGKVYQKGACGGFGKGNFSELFKSIEEYEKTLEAKRTA--------
Arabidopsis_tha   KDEEGKAYQSGGCGGFGKGNFSELFKSIEEYEKTLEAKQL---------
Euphorbia_heter   -------------------------------------------------
Abutilon_theoph   KDEEGKQYQKGGCG-----------------------------------
Conyza_canadens   KDDEGKVQQKPGCGGFGKGNFSELFKSIEEYEKTLEARNTTEPTATA--
Digitaria_sangu   KDNEGKEQQKAGCGGFGKGNFSELFKSIEEYEKTLEARATTEATAAA--
Xanthium_struma   KDNEGKEQQKAGCGGFGKGNFSELFKSIEEYEKTLEARATTEATAAA--
Ambrosia_trifid   KDEEGKVQQKAGCGGFGKGNFSELFKSIEEYEKTLEART----------
Kochia_scoparia   KDEEGKVYQKGGCGGFGKGNFSELFKSIEEYEKTLE-------------
Amaranthus_viri   -------------------------------------------------
Amaranthus_palm   KDEDGKMYQKGGCGGFGKGNFSELFKSIEEYEKTLERKQVPDTAAA---
Amaranthus_grae   KDEDGK-------------------------------------------
Amaranthus_thun   KDEDGKMYQKGGCGGFGKGNFSELFKSIEEYEKTLERKQVPDTAAA---
Amaranthus_tube   KDEDGKMYQKGGCGGFGKGNFSELFKSIEEYEKTLERKQVPDTAAA---
Amaranthus_hybr   -------------------------------------------------
Amaranthus_rudi   KDEDGKMYQKGGCGGFGKGNFSELFKSIEEYEKTLERKQVPDTAAA---

cons